Status
The genome of Verticillium dahliae was sequenced by the BROAD Institute. In order to allow comparative analyses with other fungi, a copy of the genome of V. dahliae is incorporated into MycoCosm. It was downloaded from the website of the BROAD Institute on May 20th, 2011.
Summary statistics for the Verticillium dahliae v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp} | 33.83 |
Sequencing read coverage depth | 7x |
# of contigs | 1562 |
# of scaffolds | 52 |
# of scaffolds >= 2Kbp | 52 |
Scaffold N50 | 9 |
Scaffold L50 (Mbp) | 1.27 |
# of gaps | 1510 |
% of scaffold length in gaps | 2.7% |
Three largest Scaffolds (Mbp) | 2.67, 2.53, 2.21 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1677 | 1438 |
transcript | 1495 | 1263 |
exon | 531 | 309 |
intron | 102 | 66 |
description: | ||
protein length (aa) | 474 | 395 |
exons per gene | 2.82 | 2 |
# of gene models | 10535 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Klosterman SJ, Subbarao KV, Kang S, Veronese P, Gold SE, Thomma BP, Chen Z, Henrissat B, Lee YH, Park J, Garcia-Pedrajas MD, Barbara DJ, Anchieta A, de Jonge R, Santhanam P, Maruthachalam K, Atallah Z, Amyotte SG, Paz Z, Inderbitzin P, Hayes RJ, Heiman DI, Young S, Zeng Q, Engels R, Galagan J, Cuomo CA, Dobinson KF, Ma LJ
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.
PLoS Pathog. 2011 Jul;7(7):e1002137. doi: 10.1371/journal.ppat.1002137
Klosterman SJ, Subbarao KV, Kang S, Veronese P, Gold SE, Thomma BP, Chen Z, Henrissat B, Lee YH, Park J, Garcia-Pedrajas MD, Barbara DJ, Anchieta A, de Jonge R, Santhanam P, Maruthachalam K, Atallah Z, Amyotte SG, Paz Z, Inderbitzin P, Hayes RJ, Heiman DI, Young S, Zeng Q, Engels R, Galagan J, Cuomo CA, Dobinson KF, Ma LJ
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.
PLoS Pathog. 2011 Jul;7(7):e1002137. doi: 10.1371/journal.ppat.1002137
Funding
This project was not sequenced at the JGI.