Info • Rhodosorus marinus CCMP1338

Status

The genome sequence and gene models of Rhodosorus marinus CCMP 1338 have not been determined by the JGI, but were downloaded from NCBI on February 1, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 495 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 31.19
Sequencing read coverage depth 340.0x
# of contigs 17
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 5
Scaffold L50 (Mbp) 3.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.81, 3.48, 3.35


Gene Models FilteredModels1
length (bp) of: average median
gene 1603 1301
transcript 1305 1059
exon 331 217
intron 103 93
description:
protein length (aa) 435 353
exons per gene 3.95 3
# of gene models 8045


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.