Status
This genome was sequenced by Stefanie Traeger, Minou Nowrousian et al Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany (The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution).
The genome was assembled from a combination of Illumina/Solexa and 454 reads. Gene models were predicted de novo based on homology and evidence from the RNA-seq data.
Summary statistics for the Pyronema confluens CBS100304
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 50.03 |
Sequencing read coverage depth | |
# of contigs | 1865 |
# of scaffolds | 1588 |
# of scaffolds >= 2Kbp | 1283 |
Scaffold N50 | 111 |
Scaffold L50 (Mbp) | 0.14 |
# of gaps | 277 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 0.60, 0.47, 0.47 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1674 | 1358 |
transcript | 1093 | 795 |
exon | 407 | 208 |
intron | 98 | 63 |
description: | ||
protein length (aa) | 364 | 265 |
exons per gene | 2.69 | 2 |
# of gene models | 13367 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PLoS Genet. 2013;9(9):e1003820. doi: 10.1371/journal.pgen.1003820
Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PLoS Genet. 2013;9(9):e1003820. doi: 10.1371/journal.pgen.1003820
Funding
This project was not sequenced at the JGI.