Status
[November 2023] The Metacordyceps chlamydosporia A407-32 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.07 |
| Sequencing read coverage depth | 91.23x |
| # of contigs | 19 |
| # of scaffolds | 19 |
| # of scaffolds >= 2Kbp | 19 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 5.11 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 8.59, 6.28, 6.17 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 52396 | 51146 | 97.6% |
| Ests | est.fasta | 134074303 | 132394628 | 98.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1870 | 1596 |
| transcript | 1694 | 1453 |
| exon | 582 | 359 |
| intron | 94 | 64 |
| description: | ||
| protein length (aa) | 483 | 396 |
| exons per gene | 2.91 | 2 |
| # of gene models | 13785 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
