Status
Minimal Draft
[May 2013] The Lichtheimia hyalospora genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).
Summary statistics for the Lichtheimia hyalospora v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.28 |
| Sequencing read coverage depth | 140.1x |
| # of contigs | 2294 |
| # of scaffolds | 2222 |
| # of scaffolds >= 2Kbp | 494 |
| Scaffold N50 | 79 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 72 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.62, 0.48, 0.38 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 16097 | 15500 | 96.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1640 | 1382 |
| transcript | 1363 | 1134 |
| exon | 273 | 164 |
| intron | 71 | 62 |
| description: | ||
| protein length (aa) | 417 | 342 |
| exons per gene | 4.99 | 4 |
| # of gene models | 12062 |
Collaborators
Joseph Spatafora, Oregon State University, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors.
Genome Biol Evol. 2023 Apr 6;15(4):. doi: 10.1093/gbe/evad046
Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors.
Genome Biol Evol. 2023 Apr 6;15(4):. doi: 10.1093/gbe/evad046
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
