Info • Galdieria yellowstonensis 108.79 E11

Status

The genome sequence and gene models of Galdieria yellowstonensis 108.79 E11 have not been determined by the JGI, but were downloaded from NCBI on February 7, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 521 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 14.51
Sequencing read coverage depth 285.0x
# of contigs 76
# of scaffolds 76
# of scaffolds >= 2Kbp 76
Scaffold N50 29
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.50, 0.36, 0.34


Gene Models FilteredModels1
length (bp) of: average median
gene 1481 1229
transcript 1358 1125
exon 422 205
intron 57 54
description:
protein length (aa) 453 375
exons per gene 3.22 2
# of gene models 6501


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.